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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs55741473 chr5:176574219 A/G LOC388955 chr2:63849182-63850159:- -0.93 -24.47 2.49E-86 Box Plot
THCA rs55747925 chr6:28044337 T/C BTN3A2 chr6:26365387-26378548:+ -0.29 -6.11 2.11E-9 Box Plot
THCA rs55749222 chr5:46032463 T/C LOC647121 chr1:121260910-121313686:+ 0.38 8.14 3.56E-15 Box Plot
THCA rs55751919 chr7:140148777 CTCAT/C LOC441455 chr9:99488103-99489749:+ 0.5 6.77 3.74E-11 Box Plot
THCA rs55758514 chr8:11230259 A/T SGK223 chr8:8175258-8244008:- 0.47 9.09 2.63E-18 Box Plot
THCA rs55782974 chr2:132236310 T/G CCDC74B chr2:130896860-130902707:- 0.35 6.74 4.67E-11 Box Plot
THCA rs55798617 chr2:112983874 A/T RGPD5 chr2:110550335-110615272:+ -0.49 -6.93 1.37E-11 Box Plot
THCA rs55802705 chr2:112984959 G/A RGPD5 chr2:110550335-110615272:+ -0.5 -7.03 7.11E-12 Box Plot
THCA rs55819606 chr8:3264698 T/TA CSMD1 chr8:2792875-4852494:- -0.51 -9.66 2.82E-20 Box Plot
THCA rs55821286 chr2:112985042 C/T RGPD5 chr2:110550335-110615272:+ -0.49 -6.8 3.16E-11 Box Plot
THCA rs55821596 chr15:46014955 C/T MIA3 chr1:222791428-222841354:+ 0.46 6.38 4.19E-10 Box Plot
THCA rs55833852 chr7:140148956 T/C LOC441455 chr9:99488103-99489749:+ 0.5 6.77 3.74E-11 Box Plot
THCA rs55834529 chr6:27072542 A/G RNF5P1 chr8:38458179-38458718:- 0.81 6.71 5.46E-11 Box Plot
THCA rs55834529 chr6:27072542 A/G ZFP57 chr6:29640169-29648887:- 0.82 7.15 3.25E-12 Box Plot
THCA rs55837630 chr1:111156474 T/C DLD chr7:107531415-107572175:+ -0.28 -6.01 3.7E-9 Box Plot